gmap software package provides spliced and SNP-tolerant alignment for mRNA and short reads, you can install in your Ubuntu 12.04 LTS (Precise Pangolin) by running the commands given below on the terminal,
$ sudo apt-get update $ sudo apt-get install gmap
gmap is installed in your system.
Make ensure the gmap package were installed using the commands given below,
$ sudo dpkg-query -l | grep gmap *
You will get with gmap package name, version, architecture and description in a table
| Distro | Ubuntu 12 04 lts precise pangolin |
| Section | Science |
| Package | gmap |
| Version | 2011-11-30-1 |
| Description | spliced and SNP-tolerant alignment for mRNA and short reads |
| Sub Section | Science |
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